Genome Analysis Toolkit (GATK)
The Genome Analysis Toolkit (GATK), created at the Broad Institute's Data Sciences Platform, specializes in variant discovery and genotyping. Its advanced processing engine supports large-scale projects, identifying SNPs and indels in germline DNA and RNAseq data. The toolkit also extends its capabilities to somatic variant calling and copy number variation analysis, integrating essential utilities for sequencing data processing and quality control, while accommodating various sequencing technologies.
Top Genome Analysis Toolkit (GATK) Alternatives
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Alissa Interpret serves as a universal genomic data interpretation software designed for clinical decision support.
Bioconductor
The Bioconductor project develops and shares open-source software tailored for precise analysis of biological data, fostering a collaborative community of developers and data scientists.
Microsoft Genomics
Microsoft Genomics empowers researchers with cloud-based genome sequencing and analysis through the Burrows-Wheeler Aligner (BWA) and Genome Analysis Toolkit (GATK).
Loupe Browser
Loupe Browser v8.1 offers an intuitive platform for visualizing and analyzing 10x Genomics Chromium and Visium datasets.
ROSALIND
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Galaxy
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Parse Biosciences Evercode
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MEGA
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Cufflinks
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CZ CELLxGENE Discover
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GenomeBrowse
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VSClinical
Its tailored workflow facilitates efficient scoring of variants, integrating bioinformatic evidence and clinical literature, while...
